This is a list of the Best Movies of 1999 according to John Farr. I find his site hard to navigate, so I create summary lists like this one.
English-language movies:
A Civil Action
American Beauty
Being John Malkovich
Boys Don't Cry
Dick
Election
Magnolia
October Sky
Ratcatcher
Spring Forward
The Blair Witch Project
The Cider House Rules
The Insider
The Iron Giant
The Sixth Sense
The Straight Story
The War Zone
Topsy-Turvy
Toy Story 2
Tumbleweeds
Foreign-language movies:
After Life (Japanese)
All About My Mother (Spanish)
Audition (Japanese)
Children of Heaven (Farsi)
East / West (French)
Farewell, Home Sweet Home (French)
Himalaya (Dolpo)
In China They Eat Dogs (Danish)
It All Starts Today (French)
Kadosh (Hebrew)
Leila (Farsi)
Not One Less (Mandarin)
Peppermint Candy (Korean)
Princess Mononoke (Japanese)
Running Out of Time (Cantonese)
The Color of Paradise (Farsi)
The Emperor and the Assassin (Mandarin)
The Wind Will Carry Us (Farsi)
English-language documentaries:
American Movie
Genghis Blues
Not for Ourselves Alone
One Day in September
Return With Honor
Foreign-language documentaries:
My Best Friend: Klaud Kinski (German)
The Specialist: Portrait of a Modern Criminal (French)